ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: miR-4216
source: miRNEST
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCTTCCTCAAAATTT miRNA* ATCTGGTAGAAGAGCTTAA mismatches: 2 bulges: 2 |
pre-miRNA
GAGGCATATTATAAATCTAACGAAGCTCTTCCTCAAAATTTATTAGTGCTGATATACTTCTTATCAAATAATATGTTGGTACAAAAAATAAATCTGGTAG
AAGAGCTTAATTAGATTTTGTTGTGACCT
dot-bracket secondary structure
.(((((((....((((((((..(((((((((.(((..(((((((.(((((((((((...............)))))))))))....))))))).)))..)
))))))))..))))))))...)))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GAGGCATATTATAAATCTAACGAAGCTCTTCCTCAAAATTTATTAGTGCTGATATACTTCTTATCAAATAATATGTTGGTACAAAAAATAAATCTGGTAG
AAGAGCTTAATTAGATTTTGTTGTGACCT
dot-bracket secondary structure
.(((((((....((((((((..(((((((((.(((..(((((((.(((((((((((...............)))))))))))....))))))).)))..)
))))))))..))))))))...)))).)))
SIMILARITIES| miRBase cin-mir-4216: 4e-41 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
