ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: miR-4087
source: miRNEST
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTTCCTCACCAATTATGT miRNA* ATAACGTGGATGTGGACTTGATA mismatches: 4 bulges: 2 |
pre-miRNA
TAACCAACAGGGTTGACATGCTCATTTCCTCACCAATTATGTATTGCAAAAGCATAACGTGGATGTGGACTTGATAGCATGGTTAATCCACATT
dot-bracket secondary structure
.........(((((((((((((((..(((.(((((.((((((.((....))))))))..))).)).)))..)))..)))).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAACCAACAGGGTTGACATGCTCATTTCCTCACCAATTATGTATTGCAAAAGCATAACGTGGATGTGGACTTGATAGCATGGTTAATCCACATT
dot-bracket secondary structure
.........(((((((((((((((..(((.(((((.((((((.((....))))))))..))).)).)))..)))..)))).)))))))).....
SIMILARITIES| miRBase cin-mir-4087: 4e-25 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: cin-mir-4087 from miRBase (MNEST025135) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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