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ABOUT THIS RECORD

ID: MNEST005669
species: Rattus norvegicus
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGCGCCGGGCCCGGGTCTTTC

miRNA*
AAGACCCACTCCCCGGCGCCGCT

mismatches: 3
bulges: 2

View larger
pre-miRNA
GGGGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCACCCCGTGGACGGTGTGAGGC
CGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTTCCAGAGTCCGGATGCTTGGGA


dot-bracket secondary structure
.(((((.....((.(((....(((((((((....((((((((.(((....(((((((.....((.((.....))(((((((.(((....))).))).)))
)))....))))))))))))))))))...)))))))))....)))))..)))))....



SIMILARITIES
miRBase mmu-mir-5105: 1e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM SSU_rRNA_eukarya: 2e-68
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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