ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-1898
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTCAAGGTTCACAGGGGATC miRNA* ATAATCTGTTTACTTTGACCTAA mismatches: 4 bulges: 1 |
pre-miRNA
TGTATGAACACAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGC
dot-bracket secondary structure
.((((......((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGTATGAACACAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGC
dot-bracket secondary structure
.((((......((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))..))))....
SIMILARITIES| miRBase mmu-mir-1898: 2e-38 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: eca-mir-1898 from miRBase (MNEST027312) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
