ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-1692
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAGCTCAGTTGGCAGAGTG miRNA* CTTTACCAATGAGCTGCATC mismatches: 1 bulges: 1 |
pre-miRNA
GCCCCACCATATTAGGCAAGCACTTTACCAATGAGCTGCATCTCCAGCTTCTTTCTGACTTTTCCGACCTCTTGTGAAAATGAACCCTTCCTTGGGGCTG
GGGATGTAGCTCAGTTGGCAGAGTGTTTACCTAGTATGCACAAG
dot-bracket secondary structure
.......(((((((((.(((((((((.((((((((((((((((((((((((.(((....((((((((....))).))))).))).........)))))))
))))))))))))).)))).))))))))).)))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GCCCCACCATATTAGGCAAGCACTTTACCAATGAGCTGCATCTCCAGCTTCTTTCTGACTTTTCCGACCTCTTGTGAAAATGAACCCTTCCTTGGGGCTG
GGGATGTAGCTCAGTTGGCAGAGTGTTTACCTAGTATGCACAAG
dot-bracket secondary structure
.......(((((((((.(((((((((.((((((((((((((((((((((((.(((....((((((((....))).))))).))).........)))))))
))))))))))))).)))).))))))))).)))))))))......
SIMILARITIES| miRBase mmu-mir-5106: 0.0004 PMRD no hits microPC no hits | UniProt no hits RFAM tRNA: 0.0000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
