ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-124
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTGTTCACAGCGGACCTTGA miRNA* AAGGCACGCGGTGAATGCC mismatches: 4 bulges: 0 |
pre-miRNA
CGTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCC
dot-bracket secondary structure
.((((((((.(((..((((((((.............))))))))..))).)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCC
dot-bracket secondary structure
.((((((((.(((..((((((((.............))))))))..))).)))))))).
SIMILARITIES| miRBase tgu-mir-124-2: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 1e-26 | most similar mature miRNAs |
Identical with: eca-mir-124 from miRBase (MNEST027007) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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