ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-126
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTACCGTGAGTAATAATGCG miRNA* CATTATTACTTTTGGTACGCG mismatches: 2 bulges: 0 |
pre-miRNA
TGTCTTTGCCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGTGGTCAACAGCGCAGCA
dot-bracket secondary structure
((.((.(((...((((.((.(((((((((((.(((((((.....(((....)))....))))))).))))))))))).)).))))...))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGTCTTTGCCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGTGGTCAACAGCGCAGCA
dot-bracket secondary structure
((.((.(((...((((.((.(((((((((((.(((((((.....(((....)))....))))))).))))))))))).)).))))...))).))))
SIMILARITIES| miRBase rno-mir-3567: 1e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-126: 4e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
