ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-147
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTGCGGAAATGCTTCTGC miRNA* GGAAACACTTCTGCACAAAC mismatches: 3 bulges: 0 |
pre-miRNA
AGAACACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTCGATTTTGATGCCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTTTGC
dot-bracket secondary structure
.....((((((.((((.((((((((.((.(((((((((...(((....)))......))))))))).)).)))))))).)))).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAACACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTCGATTTTGATGCCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTTTGC
dot-bracket secondary structure
.....((((((.((((.((((((((.((.(((((((((...(((....)))......))))))))).)).)))))))).)))).))))))....
SIMILARITIES| miRBase rno-mir-147: 2e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-147: 7e-30 | most similar mature miRNAs |
Identical with: rno-mir-147 from miRBase (MNEST032754) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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