ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-147
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCGCGGAAATGCTTCTGCT miRNA* TGGAAACACTTCTGCACAAAC mismatches: 4 bulges: 0 |
pre-miRNA
AGAACACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTCGATTTTGATGCCAGTGCGCGGAAATGCTTCTGCTACATTTTTAGGGTTTGC
dot-bracket secondary structure
.....((((((.((((.((((((((.((.((((((.((...(((....)))......)).)))))).)).)))))))).)))).))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAACACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTCGATTTTGATGCCAGTGCGCGGAAATGCTTCTGCTACATTTTTAGGGTTTGC
dot-bracket secondary structure
.....((((((.((((.((((((((.((.((((((.((...(((....)))......)).)))))).)).)))))))).)))).))))))....
SIMILARITIES| miRBase rno-mir-147: 4e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-147: 2e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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