ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-544
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGTTAAAATGCAGATTCTT miRNA* GATTTTGCATTGTTAATTAGCC mismatches: 2 bulges: 1 |
pre-miRNA
TGCCTGGCAACCACCTGAGACCTTGTTAAAATGCAGATTCTTATTCAGCCTGTCTGTGTGAGCTGAGGACAGGGATTTTGCATTGTTAATTAGCCCTAGG
GTGGCCAAGCCAA
dot-bracket secondary structure
....((((..((((((.((..((.(((((((((((((.((((.((((((...((.....))))))))....)))).)))))))).))))).))..)).))
))))....)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGCCTGGCAACCACCTGAGACCTTGTTAAAATGCAGATTCTTATTCAGCCTGTCTGTGTGAGCTGAGGACAGGGATTTTGCATTGTTAATTAGCCCTAGG
GTGGCCAAGCCAA
dot-bracket secondary structure
....((((..((((((.((..((.(((((((((((((.((((.((((((...((.....))))))))....)))).)))))))).))))).))..)).))
))))....)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-544: 0.00000003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
