ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-122
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAACGCCATCATCACACTAAA miRNA* GAGTGTGACAATGGTGTTTGT mismatches: 5 bulges: 0 |
pre-miRNA
GACTCTCCTTAGCAGAGCTCTGGAGTGTGACAATGGTGTTTGTGTCCAAAACATCAAACGCCATCATCACACTAAACAGCTACTGCTAGGCTATC
dot-bracket secondary structure
.......((((((((((((....(((((((..(((((((((((((.....))).))))))))))..)))))))....)))).)))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACTCTCCTTAGCAGAGCTCTGGAGTGTGACAATGGTGTTTGTGTCCAAAACATCAAACGCCATCATCACACTAAACAGCTACTGCTAGGCTATC
dot-bracket secondary structure
.......((((((((((((....(((((((..(((((((((((((.....))).))))))))))..)))))))....)))).)))))))).....
SIMILARITIES| miRBase rno-mir-3591: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-122: 3e-35 | most similar mature miRNAs |
Identical with: rno-mir-122 from miRBase (MNEST032716) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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