miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST005772
species: Rattus norvegicus
miRNA family: mir-198
source: miRNEST

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGGCAGAGGGGAAATAGGTA

miRNA*
CCTGGCTCTCCTCTCTCCCAA

mismatches: 5
bulges: 0

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pre-miRNA
TCAAGGGAGGGGCAGAGGGGAAATAGGTAAGGTGCTAGGATTGGAAAACATTCATACCCCGTGAGTCTCAGGGGCCTCAGGAGAGGGTCGGGCAATAGAC
ACCTCGTGTCCCTAAGACCTGTGGTATCCTGTTCTCCTGGCTCTCCTCTCTCCCAAGGTTT


dot-bracket secondary structure
........((((.((((((((..((((..(((...(((((.((((.....))))((((.((...((((.((((((.......(((((((........)))
.))))..)))))).)))).)).))))))))).)))))))..)))))))).)))).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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