ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-208
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTTTTTGCTCGTCTTATA miRNA* TAACCCGGGCCAAAAGCTCAC mismatches: 4 bulges: 0 |
pre-miRNA
CTCTGACCAACAAGCTTTTTGCTCGTCTTATACGTGAGAGTCAGGTATAACCCGGGCCAAAAGCTCACCCGTCA
dot-bracket secondary structure
...((((.....(((((((.(((((..((((((.(((...))).))))))..))))).))))))).....))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCTGACCAACAAGCTTTTTGCTCGTCTTATACGTGAGAGTCAGGTATAACCCGGGCCAAAAGCTCACCCGTCA
dot-bracket secondary structure
...((((.....(((((((.(((((..((((((.(((...))).))))))..))))).))))))).....))))
SIMILARITIES| miRBase rno-mir-208: 1e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-208: 8e-26 | most similar mature miRNAs |
Identical with: rno-mir-3546 from miRBase (MNEST033033) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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