ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-87
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAGCAAAGTCTCAGGTGTG miRNA* CACCTCAGGCTAAGCCCCTGTG mismatches: 4 bulges: 1 |
pre-miRNA
GCAGAAAAACCAAGAGACTCCACACCTCAGGCTAAGCCCCTGTGCCAAGGTCAAAGGAGATAGAGCAAAGTCTCAGGTGTGGGCCTTCACATACACCCAA
dot-bracket secondary structure
.............(((..(((((((((.(((((..((..((((.((.........))..)))).))..))))).)))))))))..)))............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCAGAAAAACCAAGAGACTCCACACCTCAGGCTAAGCCCCTGTGCCAAGGTCAAAGGAGATAGAGCAAAGTCTCAGGTGTGGGCCTTCACATACACCCAA
dot-bracket secondary structure
.............(((..(((((((((.(((((..((..((((.((.........))..)))).))..))))).)))))))))..)))............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q96FL9|GLT14_HUMAN: 0.0000000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
