ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-3556
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCGATTTCAAATGGTGCTAG miRNA* GAACACCAGGAGAAATCGGTCA mismatches: 4 bulges: 1 |
pre-miRNA
CCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGT
dot-bracket secondary structure
..((((.....(((((((((...(((((.((((...........))))..)))))...))))))))).....)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGT
dot-bracket secondary structure
..((((.....(((((((((...(((((.((((...........))))..)))))...))))))))).....)))).
SIMILARITIES| miRBase eca-mir-29c: 2e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 5e-18 | most similar mature miRNAs |
Identical with: eca-mir-29c from miRBase (MNEST026973) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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