ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTATAAAGTTGAGTCATGT miRNA* ATGACCCAACTTTATACTACG mismatches: 2 bulges: 0 |
pre-miRNA
GTCCAAAATAGATGACCCAACTTTATACTACGAAGTTGAGTCATGTATTTTAGAATGGATGAGGTATGCCAATATTTGTCTTATTTACTACTCCCTCCGTT
CTAAAATACATGACTCAACTTCGTAGTATAAAGTTGAGTCATGTATTTTAG
dot-bracket secondary structure
)...((((((.(((((.((((((((((((((((((((((((((((((((((((((((((.((((((.....((....))......))))..))..))))))
)))))))))))))))))))))))))))))))))))).))))).))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTCCAAAATAGATGACCCAACTTTATACTACGAAGTTGAGTCATGTATTTTAGAATGGATGAGGTATGCCAATATTTGTCTTATTTACTACTCCCTCCGTT
CTAAAATACATGACTCAACTTCGTAGTATAAAGTTGAGTCATGTATTTTAG
dot-bracket secondary structure
)...((((((.(((((.((((((((((((((((((((((((((((((((((((((((((.((((((.....((....))......))))..))..))))))
)))))))))))))))))))))))))))))))))))).))))).))))))..
SIMILARITIES| miRBase tae-MIR1137: 5.0E-7 PMRD hpr-miR1120: 8.0E-9 microPC miR1439: 5.0E-7 | UniProt no hits RFAM 2MIR1122: 1.0E-10 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
