ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1132
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATTATGGAACGGAGGGAGTA miRNA* CTCCCTCCGTCCCATAATGTA mismatches: 1 bulges: 0 |
pre-miRNA
CACCACATACAAGGCTAAATTACATGCAACTACTCCCTCCGTCCCATAATGTAAGACGTTTTTTCACACGTACACTAGTGTCAAANAACGTCTTACATTA
TGGAACGGAGGGAGTATTATCTTACTGCANGGNAGAGGCNAGCTA
dot-bracket secondary structure
.............((..........))...((((((((((((.(((((((((((((((((.(((.((((........)))).))).))))))))))))))
))).))))))))))))...(((..((....)).))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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CACCACATACAAGGCTAAATTACATGCAACTACTCCCTCCGTCCCATAATGTAAGACGTTTTTTCACACGTACACTAGTGTCAAANAACGTCTTACATTA
TGGAACGGAGGGAGTATTATCTTACTGCANGGNAGAGGCNAGCTA
dot-bracket secondary structure
.............((..........))...((((((((((((.(((((((((((((((((.(((.((((........)))).))).))))))))))))))
))).))))))))))))...(((..((....)).))).........
SIMILARITIES| miRBase tae-MIR1130: 0.00000003 PMRD tae-miR1130: 0.00000003 microPC miR1132: 3e-39 | UniProt no hits RFAM MIR1122: 3e-21 | most similar mature miRNAs |
Identical with: miR1132 from microPC (MNEST046187) |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
