ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR319
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGACTGAAGTGAGCTCCCT miRNA* GGAGCTCCCTTCAGTCCAAGC mismatches: 2 bulges: 0 |
pre-miRNA
AGATGAGGGAGCTCCCTTCAGTCCAAGCATGGAGGAGGAAAGAGAGAACAATCTCCCGCTGCATTCGCTCATTCGCACAGTACATATTGTAACATACTGG
TATGCCCTGGACTAGTCTCATATCTACTGTGTGCTCGAGTGAATGAGTCGGCAGCTCGTTCAATCCCCGCTACCTCCCATGAGTGGACTGAAGTGAGCTC
CCTCAAA
dot-bracket secondary structure
...(((((((((((.((((((((((..((((((((.((...((..((((...((.(((((.(((((((((...(((((((((.((((.(......(((((
(.........))))))..))))).)))))))))...))))))))))).))).))...))))..))....)).))).)))))..)))))))))).))))))
)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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AGATGAGGGAGCTCCCTTCAGTCCAAGCATGGAGGAGGAAAGAGAGAACAATCTCCCGCTGCATTCGCTCATTCGCACAGTACATATTGTAACATACTGG
TATGCCCTGGACTAGTCTCATATCTACTGTGTGCTCGAGTGAATGAGTCGGCAGCTCGTTCAATCCCCGCTACCTCCCATGAGTGGACTGAAGTGAGCTC
CCTCAAA
dot-bracket secondary structure
...(((((((((((.((((((((((..((((((((.((...((..((((...((.(((((.(((((((((...(((((((((.((((.(......(((((
(.........))))))..))))).)))))))))...))))))))))).))).))...))))..))....)).))).)))))..)))))))))).))))))
)))))..
SIMILARITIES| miRBase tae-MIR319: 2e-115 PMRD tae-miR319a: 6e-109 microPC miR319: 0.0000007 | UniProt no hits RFAM MIR159: 0.00001 | most similar mature miRNAs |
Identical with: tae-MIR319 from miRBase (MNEST042642) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
