ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTGTAAACTAATATAAGAA miRNA* CTTATATTAGTTTACGGAGGT mismatches: 1 bulges: 0 |
pre-miRNA
GACGCACGTACGGATACTAATAAGTTACTCTCTCTGTAAACTAATATAAGAATGTTTAGATTACTACTTTAGTATTCTAAACGCTCTTATATTAGTTTAC
GGAGGTAGTAGATAATATTACCTTCGTCCTGAAT
dot-bracket secondary structure
.........(((((...(((((..(((((.(((((((((((((((((((((.((((((((.(((((...))))).)))))))).))))))))))))))))
))))).)))))....)))))..))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACGCACGTACGGATACTAATAAGTTACTCTCTCTGTAAACTAATATAAGAATGTTTAGATTACTACTTTAGTATTCTAAACGCTCTTATATTAGTTTAC
GGAGGTAGTAGATAATATTACCTTCGTCCTGAAT
dot-bracket secondary structure
.........(((((...(((((..(((((.(((((((((((((((((((((.((((((((.(((((...))))).)))))))).))))))))))))))))
))))).)))))....)))))..))))).......
SIMILARITIES| miRBase tae-MIR1121: 0.0000004 PMRD tmo-miR1120: 5e-16 microPC miR1121: 0.000002 | UniProt no hits RFAM MIR1122: 6e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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