ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1848
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCGCCGGGGCGCGCGTGCT miRNA* TACGCCGCCTCGGCCAGCTT mismatches: 1 bulges: 1 |
pre-miRNA
TGGGACAACAAGCTCGCCGGGGCGCGCGTGCTTCTGTCACGGAGGGCTCTGCTGGACGGGGACAAGAGGCTGGAGCCGTTCACGCGTCAAGCGGAGGAGT
TCATCTGCCACATCCTGCCCAACTCCAGCTCCCCGTCGTCAACGACGGCGTACACGCCCGGCGGGCTGATGCACCGGCGGGGCAACGTCAACATGCAGTA
CGCCGCCTCGGCCAGCTTCCTGCTCA
dot-bracket secondary structure
((((.((..(((((.(((((((((.(((((((..(((.(((....(((((((((((((((((......(((((((........(((....(((((.....
...))))).......)))....))))))))))))))((((...))))((((.((.((((...)))))))))).))))))))))..)))..)))...))))
)))))))))))).)))))..))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGGACAACAAGCTCGCCGGGGCGCGCGTGCTTCTGTCACGGAGGGCTCTGCTGGACGGGGACAAGAGGCTGGAGCCGTTCACGCGTCAAGCGGAGGAGT
TCATCTGCCACATCCTGCCCAACTCCAGCTCCCCGTCGTCAACGACGGCGTACACGCCCGGCGGGCTGATGCACCGGCGGGGCAACGTCAACATGCAGTA
CGCCGCCTCGGCCAGCTTCCTGCTCA
dot-bracket secondary structure
((((.((..(((((.(((((((((.(((((((..(((.(((....(((((((((((((((((......(((((((........(((....(((((.....
...))))).......)))....))))))))))))))((((...))))((((.((.((((...)))))))))).))))))))))..)))..)))...))))
)))))))))))).)))))..))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q7XTH4|GUN11_ORYSJ: 2e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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