ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR2020
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAGCATCATCCATCCTACCA miRNA* GTAGGTGGCTGGTGCTATGG mismatches: 2 bulges: 1 |
pre-miRNA
ATCCTCTGGTTGAATTTGTCCATAGCATCATCCATCCTACCATTCAATGGTGGCTGATGCTGCCCAACGGTGGGTAGGTGGCTGGTGCTATGGATAGCTT
CAACCCGATGT
dot-bracket secondary structure
....((.(((((((.(((((((((((((((.(((.((((((..((...((((((....))))))....))..))))))))).))))))))))))))).))
))))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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ATCCTCTGGTTGAATTTGTCCATAGCATCATCCATCCTACCATTCAATGGTGGCTGATGCTGCCCAACGGTGGGTAGGTGGCTGGTGCTATGGATAGCTT
CAACCCGATGT
dot-bracket secondary structure
....((.(((((((.(((((((((((((((.(((.((((((..((...((((((....))))))....))..))))))))).))))))))))))))).))
))))).))...
SIMILARITIES| miRBase bdi-MIR5064: 0.00002 PMRD tae-miR2020: 3e-35 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: tae-miR2020 from PMRD (MNEST054736) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
