ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATTCCCTCCTTG miRNA* AGGGTGGACTCCTTCTGAATG mismatches: 5 bulges: 0 |
pre-miRNA
ACGAAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGNCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGC
TGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGGCTTGA
dot-bracket secondary structure
...(((((((((..(((((..(((((.(((.((((((((...((((....)))).((((((....))))))(((((.((..(((..((....)).)))))
.)))))..)))))))).))).)))))..)))))..)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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ACGAAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGNCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGC
TGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGGCTTGA
dot-bracket secondary structure
...(((((((((..(((((..(((((.(((.((((((((...((((....)))).((((((....))))))(((((.((..(((..((....)).)))))
.)))))..)))))))).))).)))))..)))))..)))))))))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 3e-20 microPC no hits | UniProt sp|P0CH32|UBQ4_ARATH: 5e-19 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
