miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST005897
species: Triticum aestivum
miRNA family: MIRf540
source: miRNEST

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGCATTTGCACCTGCACCCT

miRNA*
 AGGTGCAGTGGCATATGCAACT

mismatches: 5
bulges: 0
View larger
pre-miRNA
 AAAGTGCACAGCAAAGGGTTATGGGATAGAGCTGCATTTGCACCTGCACCCTANGAGAGGAAGAAAGGTCGAGGGCTTGGAACTTGGCCATGCATGCGAT
TGCGATGCATGCAACGTTCTCCTTGACCCTCTCGCTCTTCCTGTAGGTGCAGTGGCATATGCAACTCTATCACAGGCATCCTAGGTACACATCA

dot-bracket secondary structure
...(((.((.....(((((..((.(((((((.(((((.(((..(((((((.((.(((((..(((..((((((((....(((((...((.((((((((...
.)).))))))))...))))))))))))).)))..)))))..))..)))))))..))).))))).))))))).))...)))))..)).)))....


SIMILARITIES
miRBase osa-MIR530: 0.0000002

PMRD tae-miR2011: 1e-85

microPC miR530: 0.0006		UniProt no hits

RFAM MIR530: 0.000003		most similar mature miRNAs

Identical with: tae-miR2011 from PMRD (MNEST054727)

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record




Liczniki na strone;