ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCCCATAATAT miRNA* ATTATGGGACGGGGGGTGTAG mismatches: 1 bulges: 0 |
pre-miRNA
CCGGTTGATGTTAAGGGGATGATACAGATCTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACATTACATTAGTGTAAAAAACGCTCTTATATTAT
GGGACGGGGGGTGTAGTATATATAAGTCCTTTACTGCT
dot-bracket secondary structure
..(((....((..(((((((.(((.....((((.((((((((((((((((((((((((((((((.((((((...)))))).)))))))))))))))))))
))))))))))).))))....)))..))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGGTTGATGTTAAGGGGATGATACAGATCTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACATTACATTAGTGTAAAAAACGCTCTTATATTAT
GGGACGGGGGGTGTAGTATATATAAGTCCTTTACTGCT
dot-bracket secondary structure
..(((....((..(((((((.(((.....((((.((((((((((((((((((((((((((((((.((((((...)))))).)))))))))))))))))))
))))))))))).))))....)))..))))))))).)))
SIMILARITIES| miRBase hvu-MIR1120: 0.000000000002 PMRD tae-miR1120: 0.0000000001 microPC miR1439: 2e-21 | UniProt no hits RFAM MIR1122: 2e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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