ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1127
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCCGTTCGGAATTACTT miRNA* GTAATTCCGAACGGAAGGAGT mismatches: 1 bulges: 0 |
pre-miRNA
TTAGAATATACTCCCTCCGTTCGGAATTACTTGTCACAAAAATGATAAAAATGGATGTATCTACAACTAAAATGCATTTAGATACATTTATTTCTTGGAC
GAGTAATTCCGAACGGAAGGAGTAGTTGAGT
dot-bracket secondary structure
((((....((((((.((((((((((((((((((((.(((.........(((((((((((((((...............))))))))))))))).))))))
))))))))))))))))).)))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TTAGAATATACTCCCTCCGTTCGGAATTACTTGTCACAAAAATGATAAAAATGGATGTATCTACAACTAAAATGCATTTAGATACATTTATTTCTTGGAC
GAGTAATTCCGAACGGAAGGAGTAGTTGAGT
dot-bracket secondary structure
((((....((((((.((((((((((((((((((((.(((.........(((((((((((((((...............))))))))))))))).))))))
))))))))))))))))).)))))).))))..
SIMILARITIES| miRBase tae-MIR1127: 2e-70 PMRD tae-miR1127: 2e-70 microPC miR1127: 8e-58 | UniProt no hits RFAM MIR1122: 1e-35 | most similar mature miRNAs |
Identical with: tae-miR1127 from PMRD (MNEST054702) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
