ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1127
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCCGTTCGGAATTACTT miRNA* GTAATTCCGAATGGAGGGAGT mismatches: 0 bulges: 0 |
pre-miRNA
GTTGATACTACTCCCTCCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACGTATTTTAGTTCTAGATACATCCATATCCGAGACAAGTAATTC
CGAATGGAGGGAGTAGATACTA
dot-bracket secondary structure
.......((((((((((((((((((((((((((((...((.((.((((((((((((...((....)))))))))))))).)).))...))))))))))))
))))))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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GTTGATACTACTCCCTCCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACGTATTTTAGTTCTAGATACATCCATATCCGAGACAAGTAATTC
CGAATGGAGGGAGTAGATACTA
dot-bracket secondary structure
.......((((((((((((((((((((((((((((...((.((.((((((((((((...((....)))))))))))))).)).))...))))))))))))
))))))))))))))))......
SIMILARITIES| miRBase tae-MIR1135: 3e-57 PMRD tae-miR1135: 3e-57 microPC miR1135: 4e-38 | UniProt no hits RFAM MIR1122: 2e-43 | most similar mature miRNAs |
Identical with: tae-miR1135 from PMRD (MNEST054710) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
