ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1127
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCCGTTCGGAATTACTT miRNA* GTAATTCGGAATAGAGGGAGT mismatches: 2 bulges: 0 |
pre-miRNA
ACAGCATTTACTCCCTCCGTTCGGAATTACTTGTCGTAGAAATGGATGTATCTAGATGTATGTTAGTTCTAGATACATCCATATCCGAGACAAGTAATTC
GGAATAGAGGGAGTACATCACA
dot-bracket secondary structure
........(((((((((.((((.((((((((((((...((.(((((((((((((((...........))))))))))))))).))...))))))))))))
.)))).))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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ACAGCATTTACTCCCTCCGTTCGGAATTACTTGTCGTAGAAATGGATGTATCTAGATGTATGTTAGTTCTAGATACATCCATATCCGAGACAAGTAATTC
GGAATAGAGGGAGTACATCACA
dot-bracket secondary structure
........(((((((((.((((.((((((((((((...((.(((((((((((((((...........))))))))))))))).))...))))))))))))
.)))).))))))))).......
SIMILARITIES| miRBase tae-MIR1135: 9e-42 PMRD tae-miR1135: 9e-42 microPC miR1128: 6e-37 | UniProt no hits RFAM MIR1122: 1e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
