ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1128
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTACTCCCTCCGTCCGGAA miRNA* TCGGACGGAGGGAGTACGTCTT mismatches: 1 bulges: 1 |
pre-miRNA
CTTCCTCAACTTACTACTCCCTCCGTCCGGAAATAGTTGTCATCAAAATGGATAAAAGAGGATGTATCTAGATGTATTTTAGTTCTAAATACATCTTCTT
TTATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTACGTCTTGTGCTTT
dot-bracket secondary structure
........((..(((((((((((((((((((((((.(((((((((((((((((((((((((((((((.((((...((....)))))).))))))))))))
))))))))))))))))))).))))))))))))))))))))).))...)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTTCCTCAACTTACTACTCCCTCCGTCCGGAAATAGTTGTCATCAAAATGGATAAAAGAGGATGTATCTAGATGTATTTTAGTTCTAAATACATCTTCTT
TTATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTACGTCTTGTGCTTT
dot-bracket secondary structure
........((..(((((((((((((((((((((((.(((((((((((((((((((((((((((((((.((((...((....)))))).))))))))))))
))))))))))))))))))).))))))))))))))))))))).))...)).....
SIMILARITIES| miRBase tae-MIR1128: 3e-48 PMRD tae-miR1128: 1e-53 microPC miR1128: 2e-71 | UniProt no hits RFAM MIR1122: 2e-50 | most similar mature miRNAs |
Identical with: miR1128 from microPC (MNEST045233) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
