ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGAACGGAGGGAGTAAA miRNA* TACTCCCTCCGTTCCAAATTA mismatches: 2 bulges: 0 |
pre-miRNA
CTCGCTAAGCAACTACTCCCTCCGTTCCAAATTACTCGTCTTAGAAATTGATGTATCTAGAACTAAAATACATCTAGATACATCCATATTTGTGACAAGT
AATTTGGAACGGAGGGAGTAAATGGCTTCTTC
dot-bracket secondary structure
......((((...(((((((((((((((((((((((.(((.((((.((.((((((((((((...........)))))))))))).)).)))).))).)))
))))))))))))))))))))....))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCGCTAAGCAACTACTCCCTCCGTTCCAAATTACTCGTCTTAGAAATTGATGTATCTAGAACTAAAATACATCTAGATACATCCATATTTGTGACAAGT
AATTTGGAACGGAGGGAGTAAATGGCTTCTTC
dot-bracket secondary structure
......((((...(((((((((((((((((((((((.(((.((((.((.((((((((((((...........)))))))))))).)).)))).))).)))
))))))))))))))))))))....))))....
SIMILARITIES| miRBase tae-MIR1136: 1e-34 PMRD tae-miR1136: 1e-34 microPC miR1439: 1e-34 | UniProt no hits RFAM MIR1122: 2e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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