ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGAACGGAGGGAGTACC miRNA* TAGTCCCTCCGTTCCAAAATA mismatches: 2 bulges: 0 |
pre-miRNA
ATACATACACTAGTAGTCCCTCCGTTCCAAAATAAATGACCCAACTTTGTACCAATTTTGTACTAAAGTTAGTACAAAGTTGAGTATCTATTTTGGAACG
GAGGGAGTACCAAACATGGAA
dot-bracket secondary structure
.....(((....))).((((((((((((((((((.(((...(((((((((((.(((((((...))))))).)))))))))))..))).))))))))))))
))))))...(((....)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATACATACACTAGTAGTCCCTCCGTTCCAAAATAAATGACCCAACTTTGTACCAATTTTGTACTAAAGTTAGTACAAAGTTGAGTATCTATTTTGGAACG
GAGGGAGTACCAAACATGGAA
dot-bracket secondary structure
.....(((....))).((((((((((((((((((.(((...(((((((((((.(((((((...))))))).)))))))))))..))).))))))))))))
))))))...(((....)))..
SIMILARITIES| miRBase tae-MIR1137: 7e-18 PMRD ata-miR1120: 3e-26 microPC miR1439: 7e-18 | UniProt no hits RFAM MIR1122: 6e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
