ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGAACGGAGGGAGTACA miRNA* TACTCCCTTCGTTCCAGAATA mismatches: 2 bulges: 0 |
pre-miRNA
TTTAATACTCAGTTTTCTTAAATACTCCCTTCGTTCCAGAATACTTGTCGTGTTTTTAGTTTAAATTTGAACTAAAACCACGACAAGTATTTTGGAACGG
AGGGAGTACAAAACAAAAGAACGAGAATC
dot-bracket secondary structure
.......(((.(((((.((...((((((((((((((((((((((((((((((.((((((((((....)))))))))).))))))))))))))))))))))
))))))))......)).))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTAATACTCAGTTTTCTTAAATACTCCCTTCGTTCCAGAATACTTGTCGTGTTTTTAGTTTAAATTTGAACTAAAACCACGACAAGTATTTTGGAACGG
AGGGAGTACAAAACAAAAGAACGAGAATC
dot-bracket secondary structure
.......(((.(((((.((...((((((((((((((((((((((((((((((.((((((((((....)))))))))).))))))))))))))))))))))
))))))))......)).))))))))....
SIMILARITIES| miRBase bdi-MIR5175a: 0.000000007 PMRD psa-miR1120: 0.000000000002 microPC miR1132: 3e-17 | UniProt no hits RFAM MIR1122: 2e-21 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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