ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTACTCCCTCCGTTCCTAAA miRNA* TAGGAATTGAGGGAGTACTTG mismatches: 2 bulges: 0 |
pre-miRNA
AAACTAAAGCATGTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGATATTTCAACAAGTGACTGCATACGGAGCAAAATGAGTGAATCTACACTCTAA
AATATGTCTATATACATCCGTATGTGGTGTTCCATTTAAAATCTCTAGAAAGACAAATATTTAGGAATTGAGGGAGTACTTGGAAAGGAA
dot-bracket secondary structure
.........((.((((((((((.(((((((((((((((((((((((((.((((....((((((((((((((((((((....(((((......)))))...
....))).........))))))))))))....))))).)))).))))))))))))))))))))))))).)))))))))).))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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AAACTAAAGCATGTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGATATTTCAACAAGTGACTGCATACGGAGCAAAATGAGTGAATCTACACTCTAA
AATATGTCTATATACATCCGTATGTGGTGTTCCATTTAAAATCTCTAGAAAGACAAATATTTAGGAATTGAGGGAGTACTTGGAAAGGAA
dot-bracket secondary structure
.........((.((((((((((.(((((((((((((((((((((((((.((((....((((((((((((((((((((....(((((......)))))...
....))).........))))))))))))....))))).)))).))))))))))))))))))))))))).)))))))))).))........
SIMILARITIES| miRBase tae-MIR1122: 5e-23 PMRD tae-miR1122: 5e-23 microPC miR1436: 1e-20 | UniProt no hits RFAM MIR1122: 4e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
