ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTACTCCCTCCGTTCCTAAA miRNA* TAGGAACGGAGGGAGTAGAAA mismatches: 0 bulges: 0 |
pre-miRNA
CAATTGTTTGGGGACATGTCTTCTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAACAAATGACTACATACGGAGCAAAATGAGTGAATC
TACACTCTAAAACATGTCTATATACATCCATATGCGGTAGTCCATTTGAAATCTTAAAAAGACAAATATTTAGGAACGGAGGGAGTAGAAAATGTTTATC
AGTGAGAAA
dot-bracket secondary structure
..((((.....((((((...(((((((((((((((((((((((((((((((((...((((((((((.....(((((((((.((((((....(((((....
..))))).......))).........))).)))...))))))...))))))))))..))))))))))))))))))))))))))))))))).))))))..)
)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CAATTGTTTGGGGACATGTCTTCTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAACAAATGACTACATACGGAGCAAAATGAGTGAATC
TACACTCTAAAACATGTCTATATACATCCATATGCGGTAGTCCATTTGAAATCTTAAAAAGACAAATATTTAGGAACGGAGGGAGTAGAAAATGTTTATC
AGTGAGAAA
dot-bracket secondary structure
..((((.....((((((...(((((((((((((((((((((((((((((((((...((((((((((.....(((((((((.((((((....(((((....
..))))).......))).........))).)))...))))))...))))))))))..))))))))))))))))))))))))))))))))).))))))..)
)))......
SIMILARITIES| miRBase tae-MIR1122: 5e-20 PMRD tae-miR1122: 5e-20 microPC miR1436: 2e-19 | UniProt no hits RFAM MIR1122: 1e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
