ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTTCCTAAAGA miRNA* TTGGAACGGAGGGAGTATT mismatches: 0 bulges: 2 |
pre-miRNA
CGCGTCCGNNNTTATTTTGTTCCTTTTTAATTTGGTTCTAAAATAATCTAATACTCCCTCCGTTCCTAAAGATACATGATGTTTTTGTACTAAGTTGAGA
CAGTTATTTTGGAACGGAGGGAGTATTAGATTATTTTGTTCCTTTTTAATTTGGTTCTAAAATATAGTTTCAGAG
dot-bracket secondary structure
............(((((((..((...((((...((...((((((((((((((((((((((((((((..((((((.....((((((...((...)).))))
))..))))))))))))))))))))))))))))))))))..))...))))...))...)))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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CGCGTCCGNNNTTATTTTGTTCCTTTTTAATTTGGTTCTAAAATAATCTAATACTCCCTCCGTTCCTAAAGATACATGATGTTTTTGTACTAAGTTGAGA
CAGTTATTTTGGAACGGAGGGAGTATTAGATTATTTTGTTCCTTTTTAATTTGGTTCTAAAATATAGTTTCAGAG
dot-bracket secondary structure
............(((((((..((...((((...((...((((((((((((((((((((((((((((..((((((.....((((((...((...)).))))
))..))))))))))))))))))))))))))))))))))..))...))))...))...)))))))...........
SIMILARITIES| miRBase far-MIR1122: 0.00003 PMRD hpr-miR1120: 0.000009 microPC miR1439: 1e-38 | UniProt no hits RFAM MIR1122: 0.0000000002 | most similar mature miRNAs |
Identical with: miR1439 from microPC (MNEST045189) |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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