ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGTTACTCCCTCCGTCCGG miRNA* GGACGGAGGGAGTATATAT mismatches: 2 bulges: 2 |
pre-miRNA
GTCCCCTCCTTTAGCTGGCTTAGAGTTACTCCCTCCGTCCGGAATTATTTGTCATCAAAATGGATGGAAATGGATGTATCTACAACTAAAATACATCTAG
ATACATCCATTTCAATGACAAGTATTTCCGGACGGAGGGAGTATATATATATATATGGAG
dot-bracket secondary structure
.....((((..((..((...((....((((((((((((((((((.((((((((((..(((((((((....(((((((((...........))))))))).
...)))))))))..)))))))))).))))))))))))))))))..))..))..)).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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GTCCCCTCCTTTAGCTGGCTTAGAGTTACTCCCTCCGTCCGGAATTATTTGTCATCAAAATGGATGGAAATGGATGTATCTACAACTAAAATACATCTAG
ATACATCCATTTCAATGACAAGTATTTCCGGACGGAGGGAGTATATATATATATATGGAG
dot-bracket secondary structure
.....((((..((..((...((....((((((((((((((((((.((((((((((..(((((((((....(((((((((...........))))))))).
...)))))))))..)))))))))).))))))))))))))))))..))..))..)).))))
SIMILARITIES| miRBase tae-MIR1128: 1e-16 PMRD ata-miR1122: 4e-20 microPC miR1133: 7e-31 | UniProt no hits RFAM MIR1122: 1e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
