ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf1557
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACATGGTTGGCCCATGGAA miRNA* CAGTGGGTTCAATCATAAGTG mismatches: 3 bulges: 2 |
pre-miRNA
TGCTTTCACTTTCAGTGGGTTCAATCATAAGTGTGCCTGGAACGGGCCATGACATGGTTGGCCCATGGAATCCGTAGTC
dot-bracket secondary structure
.(((......(((.((((((.(((((((..(((.(((((...))))))))...))))))))))))).))).....))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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TGCTTTCACTTTCAGTGGGTTCAATCATAAGTGTGCCTGGAACGGGCCATGACATGGTTGGCCCATGGAATCCGTAGTC
dot-bracket secondary structure
.(((......(((.((((((.(((((((..(((.(((((...))))))))...))))))))))))).))).....))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O49954|GCSP_SOLTU: 0.000000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
