ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: miR171e
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGGCTCGACTCACTCAGA miRNA* TGATTGAGCCGTGCCAATATC mismatches: 3 bulges: 0 |
pre-miRNA
AGGAGGGTGGAATGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCTGCCGGCCGGCCGTAGCCATGCATCTGCATGCGGTGGTGGCTCTGATT
GAGCCGTGCCAATATCTCAGTGCTCTTTCATGCATGC
dot-bracket secondary structure
......((((((.((.((((..(((((((((.((.((((.((((((((((((....)))..(((((....((((....))))))))).)))).))))).)
))).)).)))))))))..)))))).))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGAGGGTGGAATGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCTGCCGGCCGGCCGTAGCCATGCATCTGCATGCGGTGGTGGCTCTGATT
GAGCCGTGCCAATATCTCAGTGCTCTTTCATGCATGC
dot-bracket secondary structure
......((((((.((.((((..(((((((((.((.((((.((((((((((((....)))..(((((....((((....))))))))).)))).))))).)
))).)).)))))))))..)))))).))))))......
SIMILARITIES| miRBase tae-MIR171a: 9e-70 PMRD tae-miR170b: 3e-48 microPC miR171: 3e-48 | UniProt no hits RFAM MIR171_1: 0.0000000005 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045636) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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