ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACAGAGGGAGTACT miRNA* TACTCCCTCCGTCCCAAAATT mismatches: 2 bulges: 0 |
pre-miRNA
TACAAAATAATACTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAAATACGGATGTATCTAGTTACATTTTAGTGTTAGATACATTCGTATGACA
AATCTAAGACAAGAATTTTGGGACAGAGGGAGTACTAGCTAGA
dot-bracket secondary structure
.......((.(((((((((.((((((((((((((((((((.(((((((...(((((((((((((((...((((....)))))))))))))))))))))))
))).)))))))))))))))))))).))))))))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACAAAATAATACTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAAATACGGATGTATCTAGTTACATTTTAGTGTTAGATACATTCGTATGACA
AATCTAAGACAAGAATTTTGGGACAGAGGGAGTACTAGCTAGA
dot-bracket secondary structure
.......((.(((((((((.((((((((((((((((((((.(((((((...(((((((((((((((...((((....)))))))))))))))))))))))
))).)))))))))))))))))))).))))))))).))......
SIMILARITIES| miRBase tae-MIR1122: 9e-30 PMRD tmo-miR1122: 7e-40 microPC miR1122: 0.000000007 | UniProt no hits RFAM MIR1122: 1e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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