ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGACACATCCGTATCTAGAC miRNA* CTAAATACGGATGTATCAAGT mismatches: 3 bulges: 0 |
pre-miRNA
ACCTGCTTTACATACTCCCTCCGTCCCCAAATTCTTGTCTTAGATTTGTCTAAATACGGATGTATCAAGTCATGTTTTAGTATTAGACACATCCGTATCT
AGACGAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATCATTTATTTT
dot-bracket secondary structure
...........((((((((((((((((.((((((((((((((((((((((((.((((((((((.((.(((.((......))))).)).)))))))))).)
))))))))))))))))))))))).))))))))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACCTGCTTTACATACTCCCTCCGTCCCCAAATTCTTGTCTTAGATTTGTCTAAATACGGATGTATCAAGTCATGTTTTAGTATTAGACACATCCGTATCT
AGACGAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATCATTTATTTT
dot-bracket secondary structure
...........((((((((((((((((.((((((((((((((((((((((((.((((((((((.((.(((.((......))))).)).)))))))))).)
))))))))))))))))))))))).))))))))))))))))..........
SIMILARITIES| miRBase tae-MIR1122: 2e-52 PMRD tae-miR1122: 2e-52 microPC miR1122: 4e-20 | UniProt no hits RFAM MIR1122: 2e-50 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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