ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATGTAGAC miRNA* CTAGATATGGATGTATCTATT mismatches: 1 bulges: 0 |
pre-miRNA
GAGTTGATTTGCAAGTATACGTACTCCCTCCGTCCCAAAAATCTTGTCTTAGATTTGTCTAGATATGGATGTATCTATTAGTGTTAGATACATCCGTATG
TAGACAAATCTAAGACAAGAATTTTGGGAAAGGAGGAAGTACATGACNGTGTGTTCAAAC
dot-bracket secondary structure
...((((..((((.((....(((((.(((((.((((((((.((((((((((((((((((((.(((((((((((((((.......))))))))))))))).
)))))))))))))))))))).))))))))..))))).)))))...))..)))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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GAGTTGATTTGCAAGTATACGTACTCCCTCCGTCCCAAAAATCTTGTCTTAGATTTGTCTAGATATGGATGTATCTATTAGTGTTAGATACATCCGTATG
TAGACAAATCTAAGACAAGAATTTTGGGAAAGGAGGAAGTACATGACNGTGTGTTCAAAC
dot-bracket secondary structure
...((((..((((.((....(((((.(((((.((((((((.((((((((((((((((((((.(((((((((((((((.......))))))))))))))).
)))))))))))))))))))).))))))))..))))).)))))...))..)))).))))..
SIMILARITIES| miRBase tae-MIR1122: 2e-22 PMRD tmo-miR1122: 2e-25 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 1e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
