ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATTTAGAC miRNA* CTAGATACGGATGTATCGAAC mismatches: 2 bulges: 0 |
pre-miRNA
TTTAGATAATAAGTACTCCCTCCGTCCCAAAATTCTTGTCTTACATTTGTCTAGATACGGATGTATCGAACACTAAAATGCAACTAGATACATCCGTATT
TAGACAAATCTAAGACAAGAATTTTGGGATGGAGGGAGTAGTCAACTAGCCG
dot-bracket secondary structure
.............((((((((((((((((((((((((((((((.(((((((((((((((((((((((...................))))))))))))))
))))))))).))))))))))))))))))))))))))))))............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTAGATAATAAGTACTCCCTCCGTCCCAAAATTCTTGTCTTACATTTGTCTAGATACGGATGTATCGAACACTAAAATGCAACTAGATACATCCGTATT
TAGACAAATCTAAGACAAGAATTTTGGGATGGAGGGAGTAGTCAACTAGCCG
dot-bracket secondary structure
.............((((((((((((((((((((((((((((((.(((((((((((((((((((((((...................))))))))))))))
))))))))).))))))))))))))))))))))))))))))............
SIMILARITIES| miRBase tae-MIR1122: 2e-34 PMRD tmo-miR1122: 3e-45 microPC miR1122: 0.00000003 | UniProt no hits RFAM MIR1122: 6e-44 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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