ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: miR160d
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCGAGGAGCCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
AACAATGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACTCCCCAAACCTTGCGTTGGCTCTACCGCGGATGGCGTGCGAGGAGCCAAG
CATGACCGTCTCT
dot-bracket secondary structure
....((((..(((((.(((((((.(((((((((.((((((((..((((((..............)))))).))).))))).))))))))).))))))).)
)))).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACAATGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACTCCCCAAACCTTGCGTTGGCTCTACCGCGGATGGCGTGCGAGGAGCCAAG
CATGACCGTCTCT
dot-bracket secondary structure
....((((..(((((.(((((((.(((((((((.((((((((..((((((..............)))))).))).))))).))))))))).))))))).)
)))).))))....
SIMILARITIES| miRBase tae-MIR160: 1e-59 PMRD tae-miR160: 1e-59 microPC miR160: 6e-46 | UniProt no hits RFAM mir-160: 0.000000000000007 | most similar mature miRNAs |
Identical with: tae-MIR160 from miRBase (MNEST042636) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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