ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCCG miRNA* GGGTCGAACTGGGAACACATG mismatches: 2 bulges: 0 |
pre-miRNA
AAGACGCGAGGAAATTCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCG
CCCCCGCTGGAGCCTCCTCGCCGCA
dot-bracket secondary structure
.....(((((((..((((.((((((.(((.(((((((((((((.((((.((..(((((.......)))))..)).))))....))))))))))))).)))
.)))))).))))..)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGACGCGAGGAAATTCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCG
CCCCCGCTGGAGCCTCCTCGCCGCA
dot-bracket secondary structure
.....(((((((..((((.((((((.(((.(((((((((((((.((((.((..(((((.......)))))..)).))))....))))))))))))).)))
.)))))).))))..)))))))....
SIMILARITIES| miRBase tae-MIR398: 8e-64 PMRD tae-miR2025: 2e-49 microPC miR398: 0.0000001 | UniProt no hits RFAM MIR398: 0.0000005 | most similar mature miRNAs |
Identical with: tae-miR2025 from PMRD (MNEST054744) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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