ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGTCCTTGGAAA mismatches: 0 bulges: 2 |
pre-miRNA
GATCCAGATCGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTCAACACGCGCGCGCCGGCCAGCCATGGCTTTCCTTTGCCGCCCAACACGATCGCAT
ATGCTCTTGCATGTCTCGATCTCTGCCTGCCTTGTTGATGGTTCAAGAAAGTCCTTGGAAACCATGCCCGCCTCTCCCCG
dot-bracket secondary structure
.....(((..((((.((((...((((.((((((((((((((((((((((.(((.(((..(((((....))))).....(((.....)))...(((((.((
((((....))))))..)))))..))).)))..))))))))))))))))))).)))))))...)))).)))).))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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GATCCAGATCGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTCAACACGCGCGCGCCGGCCAGCCATGGCTTTCCTTTGCCGCCCAACACGATCGCAT
ATGCTCTTGCATGTCTCGATCTCTGCCTGCCTTGTTGATGGTTCAAGAAAGTCCTTGGAAACCATGCCCGCCTCTCCCCG
dot-bracket secondary structure
.....(((..((((.((((...((((.((((((((((((((((((((((.(((.(((..(((((....))))).....(((.....)))...(((((.((
((((....))))))..)))))..))).)))..))))))))))))))))))).)))))))...)))).)))).))).....
SIMILARITIES| miRBase far-MIR396: 0.000000000000003 PMRD hvu-miR396: 7e-22 microPC miR396: 8e-74 | UniProt no hits RFAM MIR396: 0.0000000007 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST045848) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
