ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: miR159a
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCTCCTATCATTCCAATGA miRNA* TTTGGATTGAAGGGAGCTCTG mismatches: 5 bulges: 0 |
pre-miRNA
GTTTAGAGGTGGAGCTCCTATCATTCCAATGAAGGGTCTACCGGAAGGGTTTGTGCAGCTGCTCGTTCATGGTTCCCACTATCCTATCTCCATAGAAAAC
GAGGAGAGAGGCCTGTGGTTTGCATGACCGAGGAGCCGCTTCGATCCCTCGCTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCTTGA
dot-bracket secondary structure
.((.(((.(((((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...(((.(((((.........
..))))).)))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))))).))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTTTAGAGGTGGAGCTCCTATCATTCCAATGAAGGGTCTACCGGAAGGGTTTGTGCAGCTGCTCGTTCATGGTTCCCACTATCCTATCTCCATAGAAAAC
GAGGAGAGAGGCCTGTGGTTTGCATGACCGAGGAGCCGCTTCGATCCCTCGCTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCTTGA
dot-bracket secondary structure
.((.(((.(((((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...(((.(((((.........
..))))).)))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))))).))).))
SIMILARITIES| miRBase tae-MIR159a: 1e-97 PMRD tae-miR159a: 1e-97 microPC miR319: 2e-34 | UniProt no hits RFAM MIR159: 2e-22 | most similar mature miRNAs |
Identical with: tae-MIR159a from miRBase (MNEST042634) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
