ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTTCCTTCGTCCCAAAAT miRNA* TTTAGGACGTAGGGGTATAA mismatches: 2 bulges: 1 |
pre-miRNA
TATTCTGAATGATACTTCCTTCGTCCCAAAATTCTTGTTTTAAATTTGTCTAAATACGGATGTATCAAATCACGTTTTAGTATTAGATACATCCGCATCT
AGACGAATCTAAGATAAGAATTTTAGGACGTAGGGGTATAATAAGACCA
dot-bracket secondary structure
...(((.....(((((.(((.(((((.(((((((((((((((.(((((((((.((.((((((((((.(((.((......))))).)))))))))).)).)
)))))))).))))))))))))))).))))).))))))))....)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTCTGAATGATACTTCCTTCGTCCCAAAATTCTTGTTTTAAATTTGTCTAAATACGGATGTATCAAATCACGTTTTAGTATTAGATACATCCGCATCT
AGACGAATCTAAGATAAGAATTTTAGGACGTAGGGGTATAATAAGACCA
dot-bracket secondary structure
...(((.....(((((.(((.(((((.(((((((((((((((.(((((((((.((.((((((((((.(((.((......))))).)))))))))).)).)
)))))))).))))))))))))))).))))).))))))))....)))...
SIMILARITIES| miRBase tae-MIR1122: 3e-30 PMRD tae-miR1122: 3e-30 microPC miR1122: 9e-18 | UniProt no hits RFAM MIR1122: 3e-36 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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