miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST006554
species: Triticum aestivum
miRNA family: miR857
source: miRNEST

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGAATGTTGAATTGTGTC

miRNA*
CGCGGNGGCGACAGGCGAGGCG

mismatches: 4
bulges: 1

View larger
pre-miRNA
CGGCGCGGNGGCGACAGGCGAGGCGAAATGACGAAGGGAACGGGCAGCTTCGGCAAGCGCCGGNAACAAGNACCCACACGCTGTGCATCCGCTGCGGCCG
CCGCAGCTTCCACCTGCAGAAGAGCACCTGCTCCTCGTGCGGCTACCCCGCCGCCCGCATCCGCAAGTACAACTGGAGTGTGAAGGCCATCAGGNAGGAA
GACCACCGGCACCGGGAGGATGAGGTACATGCGCCATGTGCCCAGGAGGTTCAAGAGCAACTTCAGAGAGGGAACTGAGGCCGCACCAAGGAGCAAGGGA
GCCTCTTCCAGCGGCAACTAGGCGTGACAGTCTCCATTTGTTGCCCTAAGCGAAGCCCTGATCATCAAACTTAGCTTTTTTGTTGTTTTCTACTGGAACT
CTTATGTTTCTATGTTGAGAGGCAGACTATATGATGCCTGGTTATGTTATTTGCACAATTGTCGTGGACGTTAATCCTTCAGTTTTGAATGTTGAATTGT
GTC
GATGTCCAA


dot-bracket secondary structure
((((((((...(((((..((((((........((((((((((.....((.((((((..((.((.((((...(((....(((((((((...(((((((...
))))))).......))))(((((((.(((((((((.((((((((..(((.((.((((..(((((.(((...)))...))).))..(((....((..((..
..)).)))))..)))).)).((.((((((((...)))))))))).((((((.......)))))).....)))......))))))))..)))))).)))..
).)))))))))))(((((.((((.(((..(((....((((((......)))))).....)))..)))......))))....))))).(((.((.(((((.
.....)))))...)).)))(((((..........))))))))..)))).)).))....)))))).)).))))..)))))).))))))..)))))..))))
)))
)........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P49166|RL37A_YEAST: 2e-20

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record





Liczniki na strone;