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ABOUT THIS RECORD

ID: MNEST006598
species: Xenopus laevis
miRNA family: miR-1175
source: miRNEST

Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGTGGAGGTGTGCTCTCTTG

miRNA*
GTGGAGCGCAAGTCACAGTC

mismatches: 5
bulges: 1

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pre-miRNA
ATCTCCTACCTAAGGACAGCTCTTGGGGTGAAAGTGGAGGTGTGCTCTCTTGCTGGATGTGATTATATTGTCAGCAATCGCTTAGCAGTGGAGCGCAAGT
CACAGTC
TGGAATTTGCCAACGCTTGCCAAACGGA


dot-bracket secondary structure
......(((((.((((....)))).)))))...((((...((((((((.((((((...((((((...........)))))).)))))).))))))))..)
))).((.
(((.....((....))...))).))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q8IYD8|FANCM_HUMAN: 0.0000009

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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