ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-25
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTGCACTTGTCCCGGCCTG miRNA* GGTTGGGATTGGTTGCAATGCT mismatches: 1 bulges: 1 |
pre-miRNA
GGACTTGCCCCTTTCTGTATAGGTTGGGATTGGTTGCAATGCTGTACTATTTATGTAGTATTGCACTTGTCCCGGCCTGTTTAGGATGGTTGGGATT
dot-bracket secondary structure
...((.(((...(((((.((((((((((((.(((.(((((((((...........)))))))))))).)))))))))))).))))).))).))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGACTTGCCCCTTTCTGTATAGGTTGGGATTGGTTGCAATGCTGTACTATTTATGTAGTATTGCACTTGTCCCGGCCTGTTTAGGATGGTTGGGATT
dot-bracket secondary structure
...((.(((...(((((.((((((((((((.(((.(((((((((...........)))))))))))).)))))))))))).))))).))).))....
SIMILARITIES| miRBase xla-mir-92a-1: 7e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-92: 0.00000002 | most similar mature miRNAs |
Identical with: xla-mir-92a-1 from miRBase (MNEST025661) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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