ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-427
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTGCTTTCTGTTTTGGGCG miRNA* CCCAAAACGGGGCTCTCTCT mismatches: 3 bulges: 2 |
pre-miRNA
GATTTATATTTGTTTNGACTGATTATGTAGCACCCAAAACGGGGCTCTCTCTTTTGACTGAATTATGATGAGAAAGTGCTTTCTGTTTTGGGCGTTCTGG
CCATCAGATAAACGACATGGAATTGGATGTT
dot-bracket secondary structure
(((((....((((((...(((((..((.(((.(((((((((((((.((.((((.(((.....)))....)))).)).)))..)))))))))).))).)).
..)))))..))))))....))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
Source sequences
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GATTTATATTTGTTTNGACTGATTATGTAGCACCCAAAACGGGGCTCTCTCTTTTGACTGAATTATGATGAGAAAGTGCTTTCTGTTTTGGGCGTTCTGG
CCATCAGATAAACGACATGGAATTGGATGTT
dot-bracket secondary structure
(((((....((((((...(((((..((.(((.(((((((((((((.((.((((.(((.....)))....)))).)).)))..)))))))))).))).)).
..)))))..))))))....))))).......
SIMILARITIES| miRBase xla-mir-427: 2e-30 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets
Source sequences
download this record
